Private Data

Ongoing projects start with data collection, analysis, and collaboration through private software resources. At these early stages, access to the project data is limited to project participants (by invitation). Our software resources include data management via Sage Synapse, a cloud-deployed instance of the OME OMERO database, cloud-based data storage (typically AWS S3), and access to the HTA deployment of MCMICRO. After publication, this data is made publicly available. Note that all of these resources are either open source or generally available, making it straightforward for others to employ similar resources.

Read about the HTA’s approach to data sharing on the Data Overview page.

Private Data Portal Access for HTA Collaborators

The links below provide access to the Synapse-based private projects that are being used to generate and organize data for use in public tissue atlases. HTA collaborators will receive Synapse group access when data becomes available to share.

Atlas Name

BRACA 1/2 Atlas

Public Data Exploration

https://www.tissue-atlas.org/atlases/BRCA1-2

Request Portal Access

https://www.synapse.org/#!Team:3443961

Private Data Portal

https://www.synapse.org/#!Synapse:syn27250699/wiki/617601

Atlas Name

Ludwig Tumor Atlas

Public Data Exploration

https://www.ludwigtumoratlas.org/

Request Portal Access

https://www.synapse.org/#!Team:3429409

Private Data Portal

https://www.synapse.org/#!Synapse:syn25931993/wiki/611751

Atlas Name

Melanoma Pre-Cancer and Progression Atlas

Public Data Exploration

https://www.tissue-atlas.org/atlases/melanoma-pca

Request Portal Access

https://www.synapse.org/#!Team:3436622

Private Data Portal

https://www.synapse.org/#!Synapse:syn26302609/wiki/613128

Atlas Name

Tuberculosis Granuloma Atlas

Public Data Exploration

https://www.tissue-atlas.org/atlases/tuberculosis-granuloma

Request Portal Access

https://www.synapse.org/#!Team:3443962

Private Data Portal

https://www.synapse.org/#!Synapse:syn28092390/wiki/617020